J3_7B5K_005

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B5K_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.4578

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7B5K|1|A|G|1055
7B5K|1|A|G|1056
7B5K|1|A|A|1057
*
7B5K|1|A|U|1081
7B5K|1|A|U|1082
7B5K|1|A|U|1083
7B5K|1|A|A|1084
7B5K|1|A|A|1085
7B5K|1|A|A|1086
7B5K|1|A|G|1087
*
7B5K|1|A|C|1102
7B5K|1|A|A|1103
7B5K|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36