3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AG*CGCAAAU*AGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7B7D_001 not in the Motif Atlas
Geometric match to J3_4V88_078
Geometric discrepancy: 0.113
The information below is about J3_4V88_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.1
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

7B7D|1|2|A|41
7B7D|1|2|G|42
*
7B7D|1|2|C|433
7B7D|1|2|G|434
7B7D|1|2|C|435
7B7D|1|2|A|436
7B7D|1|2|A|437
7B7D|1|2|A|438
7B7D|1|2|U|439
*
7B7D|1|2|A|464
7B7D|1|2|G|465
7B7D|1|2|U|466

Current chains

Chain 2
18S rRNA

Nearby chains

Chain W
40S ribosomal protein S9-A
Chain c
40S ribosomal protein S23-A

Coloring options:


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