J3_7B7D_018

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

7B7D|1|LA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_018 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.0964

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7B7D|1|LA|A|828
7B7D|1|LA|U|829
7B7D|1|LA|A|830
7B7D|1|LA|G|831
*
7B7D|1|LA|C|863
7B7D|1|LA|G|864
7B7D|1|LA|U|865
7B7D|1|LA|A|866
7B7D|1|LA|G|867
*
7B7D|1|LA|U|892
7B7D|1|LA|C|893
7B7D|1|LA|G|894
7B7D|1|LA|A|895
7B7D|1|LA|A|896
7B7D|1|LA|U|897

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Lc

60S ribosomal protein L34-A

Chain Ln

60S ribosomal protein L19-A