J3_7B7D_020

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.4082

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7B7D|1|LA|G|1230
7B7D|1|LA|A|1231
7B7D|1|LA|C|1232
*
7B7D|1|LA|G|1256
7B7D|1|LA|C|1257
7B7D|1|LA|U|1258
7B7D|1|LA|A|1259
7B7D|1|LA|A|1260
7B7D|1|LA|G|1261
7B7D|1|LA|G|1262
*
7B7D|1|LA|C|1277
7B7D|1|LA|A|1278
7B7D|1|LA|C|1279

Current chains

Chain LA

25S rRNA

Nearby chains