J3_7B7D_021

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7B7D|1|LA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_021 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.092

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7B7D|1|LA|U|1479
7B7D|1|LA|G|1480
7B7D|1|LA|A|1481
7B7D|1|LA|A|1482
7B7D|1|LA|G|1483
7B7D|1|LA|U|1484
7B7D|1|LA|G|1485
*
7B7D|1|LA|C|1857
7B7D|1|LA|A|1858
7B7D|1|LA|A|1859
*
7B7D|1|LA|U|1871
7B7D|1|LA|C|1872
7B7D|1|LA|U|1873
7B7D|1|LA|A|1874

Current chains

Chain LA

25S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L34-A

Chain Ln

60S ribosomal protein L19-A