3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7B7D_025 not in the Motif Atlas
Homologous match to J3_8C3A_008
Geometric discrepancy: 0.0801
The information below is about J3_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

7B7D|1|LA|A|2432
7B7D|1|LA|U|2433
7B7D|1|LA|U|2434
7B7D|1|LA|G|2435
*
7B7D|1|LA|C|2512
7B7D|1|LA|U|2513
7B7D|1|LA|U|2514
7B7D|1|LA|A|2515
7B7D|1|LA|U|2516
7B7D|1|LA|U|2517
*
7B7D|1|LA|A|2590
7B7D|1|LA|A|2591
7B7D|1|LA|G|2592
7B7D|1|LA|A|2593
7B7D|1|LA|C|2594
7B7D|1|LA|A|2595
7B7D|1|LA|U|2596
7B7D|1|LA|U|2597

Current chains

Chain LA
25S rRNA

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LJ
60S ribosomal protein L8-A
Chain LP
60S ribosomal protein L15-A
Chain Le
60S ribosomal protein L36-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2145 s