J3_7B7D_037
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7B7D|1|LA|U|343, 7B7D|1|LA|A|351, 7B7D|1|LC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7B7D_037 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0594
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7B7D|1|LA|C|340
7B7D|1|LA|G|341
7B7D|1|LA|A|342
7B7D|1|LA|U|343
7B7D|1|LA|A|344
7B7D|1|LA|G|345
7B7D|1|LA|C|346
7B7D|1|LA|G|347
7B7D|1|LA|A|348
7B7D|1|LA|A|349
7B7D|1|LA|C|350
7B7D|1|LA|A|351
7B7D|1|LA|A|352
7B7D|1|LA|G|353
7B7D|1|LA|U|354
7B7D|1|LA|A|355
7B7D|1|LA|C|356
*
7B7D|1|LA|G|363
7B7D|1|LA|G|364
7B7D|1|LA|A|365
7B7D|1|LA|A|366
7B7D|1|LA|A|367
7B7D|1|LA|G|368
*
7B7D|1|LC|C|21
7B7D|1|LC|U|22
7B7D|1|LC|U|23
7B7D|1|LC|G|24
Current chains
- Chain LA
- 25S rRNA
- Chain LC
- 5.8S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LU
- 60S ribosomal protein L26-A
- Chain Lf
- 60S ribosomal protein L37-A
- Chain Lh
- 60S ribosomal protein L39
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