J3_7BGE_007

3D structure

PDB id

7BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BGE_007 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.216

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7BGE|1|a|U|1085
7BGE|1|a|G|1086
*
7BGE|1|a|U|1095
7BGE|1|a|G|1096
7BGE|1|a|U|1097
7BGE|1|a|U|1098
7BGE|1|a|G|1099
*
7BGE|1|a|C|1110
7BGE|1|a|G|1111
7BGE|1|a|C|1112
7BGE|1|a|A|1113
7BGE|1|a|A|1114

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2