J3_7BGE_014
3D structure
- PDB id
- 7BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 7BGE|1|a|U|1194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BGE_014 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1392
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7BGE|1|a|U|1128
7BGE|1|a|A|1129
7BGE|1|a|A|1130
*
7BGE|1|a|U|1166
7BGE|1|a|G|1167
7BGE|1|a|A|1168
7BGE|1|a|C|1169
7BGE|1|a|U|1170
7BGE|1|a|G|1171
7BGE|1|a|C|1172
*
7BGE|1|a|G|1186
7BGE|1|a|A|1187
7BGE|1|a|G|1188
7BGE|1|a|G|1189
7BGE|1|a|A|1190
7BGE|1|a|A|1191
7BGE|1|a|G|1192
7BGE|1|a|G|1193
7BGE|1|a|U|1194
7BGE|1|a|G|1195
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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