J3_7BHP_003

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

7BHP|1|L5|C|967, 7BHP|1|L5|C|968, 7BHP|1|L5|U|971, 7BHP|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|C|712
7BHP|1|L5|C|713
*
7BHP|1|L5|G|955
7BHP|1|L5|A|956
7BHP|1|L5|G|957
7BHP|1|L5|G|958
7BHP|1|L5|G|959
7BHP|1|L5|A|960
7BHP|1|L5|G|961
7BHP|1|L5|C|962
7BHP|1|L5|G|963
7BHP|1|L5|A|964
7BHP|1|L5|G|965
7BHP|1|L5|A|966
7BHP|1|L5|C|967
7BHP|1|L5|C|968
7BHP|1|L5|C|969
7BHP|1|L5|G|970
7BHP|1|L5|U|971
7BHP|1|L5|C|972
7BHP|1|L5|G|973
7BHP|1|L5|C|974
7BHP|1|L5|C|975
7BHP|1|L5|G|976
*
7BHP|1|L5|C|1278
7BHP|1|L5|A|1279
7BHP|1|L5|C|1280
7BHP|1|L5|G|1281
7BHP|1|L5|G|1282
7BHP|1|L5|G|1283
7BHP|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32