J3_7BL2_009

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BL2_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.2187

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7BL2|1|A|C|2091
7BL2|1|A|U|2092
7BL2|1|A|G|2093
*
7BL2|1|A|C|2196
7BL2|1|A|U|2197
7BL2|1|A|A|2198
7BL2|1|A|A|2199
7BL2|1|A|C|2200
*
7BL2|1|A|G|2223
7BL2|1|A|G|2224
7BL2|1|A|A|2225
7BL2|1|A|C|2226
7BL2|1|A|A|2227
7BL2|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28