J3_7BL5_003

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7BL5|1|A|U|686, 7BL5|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BL5_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.362

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7BL5|1|A|U|683
7BL5|1|A|G|684
7BL5|1|A|A|685
7BL5|1|A|U|686
7BL5|1|A|C|687
7BL5|1|A|U|688
7BL5|1|A|A|689
*
7BL5|1|A|U|773
7BL5|1|A|G|774
7BL5|1|A|G|775
*
7BL5|1|A|C|791
7BL5|1|A|A|792
7BL5|1|A|A|793
7BL5|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2