J3_7BL6_004

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BL6_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1241

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7BL6|1|A|C|698
7BL6|1|A|A|699
7BL6|1|A|G|700
*
7BL6|1|A|C|732
7BL6|1|A|G|733
7BL6|1|A|A|734
7BL6|1|A|A|735
7BL6|1|A|C|736
*
7BL6|1|A|G|760
7BL6|1|A|A|761
7BL6|1|A|U|762
7BL6|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2