J3_7BT6_023
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU
- Length
- 36 nucleotides
- Bulged bases
- 7BT6|1|1|A|3172, 7BT6|1|1|G|3173, 7BT6|1|1|A|3215, 7BT6|1|1|G|3216, 7BT6|1|1|C|3217, 7BT6|1|1|A|3218, 7BT6|1|1|G|3219, 7BT6|1|1|A|3268, 7BT6|1|1|U|3270, 7BT6|1|1|C|3272, 7BT6|1|1|G|3276, 7BT6|1|1|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BT6|1|1|A|3168
7BT6|1|1|U|3169
7BT6|1|1|A|3170
7BT6|1|1|U|3171
7BT6|1|1|A|3172
7BT6|1|1|G|3173
7BT6|1|1|A|3174
7BT6|1|1|U|3175
7BT6|1|1|G|3176
*
7BT6|1|1|C|3212
7BT6|1|1|A|3213
7BT6|1|1|U|3214
7BT6|1|1|A|3215
7BT6|1|1|G|3216
7BT6|1|1|C|3217
7BT6|1|1|A|3218
7BT6|1|1|G|3219
7BT6|1|1|G|3220
*
7BT6|1|1|C|3265
7BT6|1|1|G|3266
7BT6|1|1|A|3267
7BT6|1|1|A|3268
7BT6|1|1|U|3269
7BT6|1|1|U|3270
7BT6|1|1|G|3271
7BT6|1|1|C|3272
7BT6|1|1|A|3273
7BT6|1|1|A|3274
7BT6|1|1|U|3275
7BT6|1|1|G|3276
7BT6|1|1|U|3277
7BT6|1|1|C|3278
7BT6|1|1|A|3279
7BT6|1|1|U|3280
7BT6|1|1|U|3281
7BT6|1|1|U|3282
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
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