J3_7BTB_007
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 7BTB|1|1|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BTB_007 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0944
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
7BTB|1|1|U|1479
7BTB|1|1|G|1480
7BTB|1|1|A|1481
7BTB|1|1|A|1482
7BTB|1|1|G|1483
7BTB|1|1|U|1484
7BTB|1|1|G|1485
*
7BTB|1|1|C|1857
7BTB|1|1|A|1858
7BTB|1|1|A|1859
*
7BTB|1|1|U|1871
7BTB|1|1|C|1872
7BTB|1|1|U|1873
7BTB|1|1|A|1874
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain g
- 60S ribosomal protein L34-A
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