J3_7BTB_017
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7BTB|1|1|U|343, 7BTB|1|1|A|351, 7BTB|1|2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BTB_017 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0891
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7BTB|1|1|C|340
7BTB|1|1|G|341
7BTB|1|1|A|342
7BTB|1|1|U|343
7BTB|1|1|A|344
7BTB|1|1|G|345
7BTB|1|1|C|346
7BTB|1|1|G|347
7BTB|1|1|A|348
7BTB|1|1|A|349
7BTB|1|1|C|350
7BTB|1|1|A|351
7BTB|1|1|A|352
7BTB|1|1|G|353
7BTB|1|1|U|354
7BTB|1|1|A|355
7BTB|1|1|C|356
*
7BTB|1|1|G|363
7BTB|1|1|G|364
7BTB|1|1|A|365
7BTB|1|1|A|366
7BTB|1|1|A|367
7BTB|1|1|G|368
*
7BTB|1|2|C|21
7BTB|1|2|U|22
7BTB|1|2|U|23
7BTB|1|2|G|24
Current chains
- Chain 1
- RDN25-1 rRNA
- Chain 2
- RDN5.8-1 rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: