J3_7CPU_001

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7CPU|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|112
7CPU|1|L5|A|113
7CPU|1|L5|G|114
7CPU|1|L5|C|115
7CPU|1|L5|G|116
*
7CPU|1|L5|C|155
7CPU|1|L5|G|156
7CPU|1|L5|U|157
7CPU|1|L5|A|158
7CPU|1|L5|C|159
7CPU|1|L5|G|160
*
7CPU|1|L5|C|274
7CPU|1|L5|C|275
7CPU|1|L5|G|276
7CPU|1|L5|G|277

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36