J3_7CPU_003

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GAGGAAGCGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

7CPU|1|L5|A|857, 7CPU|1|L5|C|860, 7CPU|1|L5|U|871, 7CPU|1|L5|C|1095

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|720
7CPU|1|L5|C|721
*
7CPU|1|L5|G|853
7CPU|1|L5|A|854
7CPU|1|L5|G|855
7CPU|1|L5|G|856
7CPU|1|L5|A|857
7CPU|1|L5|A|858
7CPU|1|L5|G|859
7CPU|1|L5|C|860
7CPU|1|L5|G|870
7CPU|1|L5|U|871
7CPU|1|L5|C|872
7CPU|1|L5|G|873
7CPU|1|L5|C|874
7CPU|1|L5|C|875
7CPU|1|L5|G|876
*
7CPU|1|L5|C|1093
7CPU|1|L5|A|1094
7CPU|1|L5|C|1095
7CPU|1|L5|G|1096
7CPU|1|L5|G|1097
7CPU|1|L5|G|1098
7CPU|1|L5|G|1099

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32