J3_7CPU_004

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUC*GCC*GCGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|881
7CPU|1|L5|U|882
7CPU|1|L5|C|883
*
7CPU|1|L5|G|926
7CPU|1|L5|C|927
7CPU|1|L5|C|928
*
7CPU|1|L5|G|1070
7CPU|1|L5|C|1071
7CPU|1|L5|G|1072
7CPU|1|L5|U|1073
7CPU|1|L5|G|1088

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29