J3_7CPU_011

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|A|2308
7CPU|1|L5|G|2309
7CPU|1|L5|A|2310
7CPU|1|L5|U|2311
7CPU|1|L5|G|2312
*
7CPU|1|L5|C|2326
7CPU|1|L5|A|2327
7CPU|1|L5|G|2328
7CPU|1|L5|U|2329
*
7CPU|1|L5|A|2511
7CPU|1|L5|G|2512
7CPU|1|L5|G|2513
7CPU|1|L5|G|2514
7CPU|1|L5|U|2515
7CPU|1|L5|G|2516
7CPU|1|L5|U|2517
7CPU|1|L5|A|2518
7CPU|1|L5|A|2519
7CPU|1|L5|A|2520
7CPU|1|L5|U|2521

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27