J3_7CPU_022

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAGAG*CAG*CUGGAUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|S2|U|816
7CPU|1|S2|A|817
7CPU|1|S2|G|818
7CPU|1|S2|A|819
7CPU|1|S2|G|820
*
7CPU|1|S2|C|830
7CPU|1|S2|A|831
7CPU|1|S2|G|832
*
7CPU|1|S2|C|844
7CPU|1|S2|U|845
7CPU|1|S2|G|846
7CPU|1|S2|G|847
7CPU|1|S2|A|848
7CPU|1|S2|U|849
7CPU|1|S2|A|850

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24