J3_7CPU_023
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7CPU|1|S2|G|992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_023 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1081
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7CPU|1|S2|A|939
7CPU|1|S2|U|940
7CPU|1|S2|U|941
7CPU|1|S2|C|942
*
7CPU|1|S2|G|986
7CPU|1|S2|G|987
7CPU|1|S2|A|988
7CPU|1|S2|C|989
7CPU|1|S2|C|990
7CPU|1|S2|A|991
7CPU|1|S2|G|992
7CPU|1|S2|A|993
7CPU|1|S2|G|994
*
7CPU|1|S2|C|1001
7CPU|1|S2|A|1002
7CPU|1|S2|U|1003
7CPU|1|S2|U|1004
7CPU|1|S2|U|1005
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
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