J3_7CPU_024

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7CPU|1|S2|C|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|S2|C|1095
7CPU|1|S2|U|1096
7CPU|1|S2|G|1097
*
7CPU|1|S2|U|1137
7CPU|1|S2|U|1138
7CPU|1|S2|C|1139
7CPU|1|S2|C|1140
7CPU|1|S2|G|1141
*
7CPU|1|S2|C|1148
7CPU|1|S2|A|1149
7CPU|1|S2|A|1150
7CPU|1|S2|A|1151
7CPU|1|S2|G|1152

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27