J3_7CPU_033

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7CPU|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|196
7CPU|1|L5|A|197
7CPU|1|L5|A|198
7CPU|1|L5|G|199
*
7CPU|1|L5|C|215
7CPU|1|L5|C|216
7CPU|1|L5|C|217
7CPU|1|L5|A|218
7CPU|1|L5|G|219
7CPU|1|L5|C|220
7CPU|1|L5|C|221
7CPU|1|L5|C|222
7CPU|1|L5|G|223
7CPU|1|L5|U|224
7CPU|1|L5|G|225
7CPU|1|L5|G|226
7CPU|1|L5|A|227
7CPU|1|L5|C|228
*
7CPU|1|L5|G|240
7CPU|1|L5|G|241
7CPU|1|L5|U|242
7CPU|1|L5|A|243
7CPU|1|L5|G|244

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26