J3_7CPU_036

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

7CPU|1|L5|C|712, 7CPU|1|L5|U|1110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|450
7CPU|1|L5|A|451
7CPU|1|L5|G|452
7CPU|1|L5|U|453
7CPU|1|L5|C|454
*
7CPU|1|L5|G|709
7CPU|1|L5|U|710
7CPU|1|L5|G|711
7CPU|1|L5|C|712
7CPU|1|L5|G|713
*
7CPU|1|L5|C|1107
7CPU|1|L5|G|1108
7CPU|1|L5|A|1109
7CPU|1|L5|U|1110
7CPU|1|L5|G|1111

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a