J3_7CPU_039

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUG*CGUUC*GUUGAACGCACGUUC

Length

24 nucleotides

Bulged bases

7CPU|1|L5|U|4528, 7CPU|1|L5|U|4584, 7CPU|1|L5|A|4586, 7CPU|1|L5|C|4588, 7CPU|1|L5|A|4591, 7CPU|1|L5|C|4592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|G|4405
7CPU|1|L5|U|4406
7CPU|1|L5|U|4407
7CPU|1|L5|G|4408
*
7CPU|1|L5|C|4525
7CPU|1|L5|G|4526
7CPU|1|L5|U|4527
7CPU|1|L5|U|4528
7CPU|1|L5|C|4529
*
7CPU|1|L5|G|4582
7CPU|1|L5|U|4583
7CPU|1|L5|U|4584
7CPU|1|L5|G|4585
7CPU|1|L5|A|4586
7CPU|1|L5|A|4587
7CPU|1|L5|C|4588
7CPU|1|L5|G|4589
7CPU|1|L5|C|4590
7CPU|1|L5|A|4591
7CPU|1|L5|C|4592
7CPU|1|L5|G|4593
7CPU|1|L5|U|4594
7CPU|1|L5|U|4595
7CPU|1|L5|C|4596

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a