J3_7CPU_045

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

7CPU|1|L5|U|4637, 7CPU|1|L5|C|4638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|4618
7CPU|1|L5|A|4619
7CPU|1|L5|U|4620
*
7CPU|1|L5|G|4634
7CPU|1|L5|C|4635
7CPU|1|L5|U|4636
7CPU|1|L5|U|4637
7CPU|1|L5|C|4638
7CPU|1|L5|U|4639
*
7CPU|1|L5|A|4708
7CPU|1|L5|A|4709
7CPU|1|L5|G|4710
7CPU|1|L5|G|4711

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31