J3_7CPV_008

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7CPV|1|L5|A|2153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPV_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0779

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7CPV|1|L5|C|2150
7CPV|1|L5|G|2151
7CPV|1|L5|A|2152
7CPV|1|L5|A|2153
7CPV|1|L5|G|2154
7CPV|1|L5|U|2155
7CPV|1|L5|G|2156
*
7CPV|1|L5|C|2559
7CPV|1|L5|A|2560
7CPV|1|L5|A|2561
*
7CPV|1|L5|U|2573
7CPV|1|L5|C|2574
7CPV|1|L5|U|2575
7CPV|1|L5|G|2576

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34