J3_7CPV_013

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPV_013 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1351

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7CPV|1|L5|C|3594
7CPV|1|L5|G|3595
7CPV|1|L5|G|3596
*
7CPV|1|L5|C|3725
7CPV|1|L5|U|3726
7CPV|1|L5|G|3727
7CPV|1|L5|A|3728
7CPV|1|L5|C|3729
*
7CPV|1|L5|G|3821
7CPV|1|L5|G|3822
7CPV|1|L5|A|3823
7CPV|1|L5|C|3824
7CPV|1|L5|A|3825
7CPV|1|L5|G|3826

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15