J3_7CPV_037

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPV_037 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1765

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7CPV|1|L5|A|2352
7CPV|1|L5|G|2353
7CPV|1|L5|A|2354
7CPV|1|L5|A|2355
7CPV|1|L5|G|2356
*
7CPV|1|L5|C|2491
7CPV|1|L5|C|2492
*
7CPV|1|L5|G|2496
7CPV|1|L5|A|2497
7CPV|1|L5|A|2498
7CPV|1|L5|A|2499
7CPV|1|L5|A|2500
7CPV|1|L5|U|2501

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a