J3_7D4I_012
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D4I_012 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.2575
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7D4I|1|SA|C|1161
7D4I|1|SA|C|1162
7D4I|1|SA|A|1163
7D4I|1|SA|G|1164
*
7D4I|1|SA|C|1581
7D4I|1|SA|U|1582
7D4I|1|SA|A|1583
7D4I|1|SA|G|1584
7D4I|1|SA|U|1585
7D4I|1|SA|A|1586
7D4I|1|SA|A|1587
*
7D4I|1|SA|U|1609
7D4I|1|SA|G|1610
7D4I|1|SA|A|1611
7D4I|1|SA|U|1612
7D4I|1|SA|U|1613
7D4I|1|SA|A|1614
7D4I|1|SA|C|1615
7D4I|1|SA|G|1616
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain B1
- Periodic tryptophan protein 2
- Chain SG
- 40S ribosomal protein S5
- Chain SR
- 40S ribosomal protein S16-A
- Chain Sd
- 40S ribosomal protein S28-A
Coloring options: