J3_7D5T_002

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7D5T|1|SA|G|42, 7D5T|1|SA|A|47, 7D5T|1|SA|C|433, 7D5T|1|SA|G|434, 7D5T|1|SA|C|435, 7D5T|1|SA|A|436, 7D5T|1|SA|A|437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5T|1|SA|A|41
7D5T|1|SA|G|42
7D5T|1|SA|A|43
7D5T|1|SA|U|44
7D5T|1|SA|U|45
7D5T|1|SA|A|46
7D5T|1|SA|A|47
7D5T|1|SA|G|48
*
7D5T|1|SA|C|431
7D5T|1|SA|G|432
7D5T|1|SA|C|433
7D5T|1|SA|G|434
7D5T|1|SA|C|435
7D5T|1|SA|A|436
7D5T|1|SA|A|437
7D5T|1|SA|A|438
7D5T|1|SA|U|439
*
7D5T|1|SA|A|464
7D5T|1|SA|G|465
7D5T|1|SA|U|466

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SY

40S ribosomal protein S23-A