J3_7D5T_004
3D structure
- PDB id
- 7D5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7D5T|1|SA|C|934
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D5T_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2436
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7D5T|1|SA|A|881
7D5T|1|SA|U|882
7D5T|1|SA|C|883
7D5T|1|SA|A|884
*
7D5T|1|SA|U|928
7D5T|1|SA|A|929
7D5T|1|SA|A|930
7D5T|1|SA|C|931
7D5T|1|SA|U|932
7D5T|1|SA|A|933
7D5T|1|SA|C|934
7D5T|1|SA|U|935
7D5T|1|SA|G|936
*
7D5T|1|SA|C|943
7D5T|1|SA|A|944
7D5T|1|SA|U|945
7D5T|1|SA|U|946
7D5T|1|SA|U|947
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain RT
- Pno1
- Chain SC
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S13
- Chain SP
- 40S ribosomal protein S14-A
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