J3_7D5T_007

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

7D5T|1|SA|U|1473, 7D5T|1|SA|G|1539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5T|1|SA|C|1470
7D5T|1|SA|A|1471
7D5T|1|SA|C|1472
7D5T|1|SA|U|1473
7D5T|1|SA|G|1474
*
7D5T|1|SA|C|1533
7D5T|1|SA|G|1534
7D5T|1|SA|U|1535
7D5T|1|SA|G|1536
7D5T|1|SA|C|1537
7D5T|1|SA|U|1538
7D5T|1|SA|G|1539
7D5T|1|SA|G|1540
*
7D5T|1|SA|C|1571
7D5T|1|SA|G|1572
7D5T|1|SA|A|1573
7D5T|1|SA|G|1574

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S5