J3_7D6Z_019
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7D6Z|1|f|A|975, 7D6Z|1|f|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D6Z_019 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0848
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7D6Z|1|f|U|955
7D6Z|1|f|U|956
7D6Z|1|f|U|957
7D6Z|1|f|A|958
7D6Z|1|f|A|959
7D6Z|1|f|U|960
7D6Z|1|f|U|961
7D6Z|1|f|C|962
*
7D6Z|1|f|G|973
7D6Z|1|f|A|974
7D6Z|1|f|A|975
7D6Z|1|f|G|976
7D6Z|1|f|A|977
7D6Z|1|f|A|978
7D6Z|1|f|C|979
7D6Z|1|f|C|980
7D6Z|1|f|U|981
7D6Z|1|f|U|982
7D6Z|1|f|A|983
7D6Z|1|f|C|984
*
7D6Z|1|f|G|1221
7D6Z|1|f|G|1222
7D6Z|1|f|C|1223
7D6Z|1|f|U|1224
7D6Z|1|f|A|1225
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain q
- 30S ribosomal protein S10
- Chain t
- 30S ribosomal protein S13
- Chain u
- 30S ribosomal protein S14
- Chain z
- 30S ribosomal protein S19
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