J3_7D6Z_022
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D6Z_022 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1028
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7D6Z|1|f|C|1063
7D6Z|1|f|G|1064
7D6Z|1|f|U|1065
7D6Z|1|f|C|1066
7D6Z|1|f|A|1067
7D6Z|1|f|G|1068
*
7D6Z|1|f|C|1107
7D6Z|1|f|G|1108
7D6Z|1|f|C|1109
7D6Z|1|f|A|1110
7D6Z|1|f|A|1111
7D6Z|1|f|C|1112
7D6Z|1|f|C|1113
*
7D6Z|1|f|G|1187
7D6Z|1|f|A|1188
7D6Z|1|f|U|1189
7D6Z|1|f|G|1190
7D6Z|1|f|A|1191
7D6Z|1|f|C|1192
7D6Z|1|f|G|1193
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S2
- Chain j
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S5
- Chain p
- 30S ribosomal protein S9
- Chain q
- 30S ribosomal protein S10
- Chain u
- 30S ribosomal protein S14
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