J3_7D80_024
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 7D80|1|A|U|321, 7D80|1|A|U|339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D80_024 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1247
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7D80|1|A|G|297
7D80|1|A|G|298
7D80|1|A|A|299
7D80|1|A|A|300
7D80|1|A|G|301
*
7D80|1|A|C|316
7D80|1|A|G|317
7D80|1|A|C|318
7D80|1|A|G|319
7D80|1|A|A|320
7D80|1|A|U|321
7D80|1|A|A|322
7D80|1|A|C|323
7D80|1|A|A|324
7D80|1|A|G|325
*
7D80|1|A|C|337
7D80|1|A|G|338
7D80|1|A|U|339
7D80|1|A|A|340
7D80|1|A|C|341
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain s
- 50S ribosomal protein L24
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