J3_7D80_026

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAGGUUGAAG*UGGAGGACCGAAC*GAUG

Length

27 nucleotides

Bulged bases

7D80|1|A|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|698
7D80|1|A|A|699
7D80|1|A|G|700
7D80|1|A|G|701
7D80|1|A|U|702
7D80|1|A|U|703
7D80|1|A|G|704
7D80|1|A|A|705
7D80|1|A|A|706
7D80|1|A|G|707
*
7D80|1|A|U|724
7D80|1|A|G|725
7D80|1|A|G|726
7D80|1|A|A|727
7D80|1|A|G|728
7D80|1|A|G|729
7D80|1|A|A|730
7D80|1|A|C|731
7D80|1|A|C|732
7D80|1|A|G|733
7D80|1|A|A|734
7D80|1|A|A|735
7D80|1|A|C|736
*
7D80|1|A|G|760
7D80|1|A|A|761
7D80|1|A|U|762
7D80|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2