J3_7D80_030

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAACUGUUUAUUAAAAACACAGCA*UGUGAC*GUAAUG

Length

36 nucleotides

Bulged bases

7D80|1|A|A|1780, 7D80|1|A|U|1781, 7D80|1|A|U|1782, 7D80|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|1771
7D80|1|A|A|1772
7D80|1|A|A|1773
7D80|1|A|C|1774
7D80|1|A|U|1775
7D80|1|A|G|1776
7D80|1|A|U|1777
7D80|1|A|U|1778
7D80|1|A|U|1779
7D80|1|A|A|1780
7D80|1|A|U|1781
7D80|1|A|U|1782
7D80|1|A|A|1783
7D80|1|A|A|1784
7D80|1|A|A|1785
7D80|1|A|A|1786
7D80|1|A|A|1787
7D80|1|A|C|1788
7D80|1|A|A|1789
7D80|1|A|C|1790
7D80|1|A|A|1791
7D80|1|A|G|1792
7D80|1|A|C|1793
7D80|1|A|A|1794
*
7D80|1|A|U|1825
7D80|1|A|G|1826
7D80|1|A|U|1827
7D80|1|A|G|1828
7D80|1|A|A|1829
7D80|1|A|C|1830
*
7D80|1|A|G|1975
7D80|1|A|U|1976
7D80|1|A|A|1977
7D80|1|A|A|1978
7D80|1|A|U|1979
7D80|1|A|G|1980

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2