J3_7D80_031

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUG*CUAACGUUG*UGCGGACAG

Length

21 nucleotides

Bulged bases

7D80|1|A|A|2198, 7D80|1|A|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|2091
7D80|1|A|U|2092
7D80|1|A|G|2093
*
7D80|1|A|C|2196
7D80|1|A|U|2197
7D80|1|A|A|2198
7D80|1|A|A|2199
7D80|1|A|C|2200
7D80|1|A|G|2201
7D80|1|A|U|2202
7D80|1|A|U|2203
7D80|1|A|G|2204
*
7D80|1|A|U|2220
7D80|1|A|G|2221
7D80|1|A|C|2222
7D80|1|A|G|2223
7D80|1|A|G|2224
7D80|1|A|A|2225
7D80|1|A|C|2226
7D80|1|A|A|2227
7D80|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain g

50S ribosomal protein L9

Chain v

50S ribosomal protein L28