J3_7D80_033

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAUC*GUAUGGC*GCCAUUUAAAG

Length

22 nucleotides

Bulged bases

7D80|1|A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|2517
7D80|1|A|A|2518
7D80|1|A|U|2519
7D80|1|A|C|2520
*
7D80|1|A|G|2545
7D80|1|A|U|2546
7D80|1|A|A|2547
7D80|1|A|U|2548
7D80|1|A|G|2549
7D80|1|A|G|2550
7D80|1|A|C|2551
*
7D80|1|A|G|2557
7D80|1|A|C|2558
7D80|1|A|C|2559
7D80|1|A|A|2560
7D80|1|A|U|2561
7D80|1|A|U|2562
7D80|1|A|U|2563
7D80|1|A|A|2564
7D80|1|A|A|2565
7D80|1|A|A|2566
7D80|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain j

50S ribosomal protein L14