J3_7D80_036

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCGG*CUUGA*UGACGC

Length

15 nucleotides

Bulged bases

7D80|1|B|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|G|585
7D80|1|B|C|586
7D80|1|B|G|587
7D80|1|B|G|588
*
7D80|1|B|C|651
7D80|1|B|U|652
7D80|1|B|U|653
7D80|1|B|G|654
7D80|1|B|A|655
*
7D80|1|B|U|751
7D80|1|B|G|752
7D80|1|B|A|753
7D80|1|B|C|754
7D80|1|B|G|755
7D80|1|B|C|756

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain M

30S ribosomal protein S12

Chain P

30S ribosomal protein S15

Chain R

30S ribosomal protein S17