J3_7D80_039

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7D80|1|B|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D80_039 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2411

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7D80|1|B|C|990
7D80|1|B|U|991
7D80|1|B|U|992
7D80|1|B|G|993
7D80|1|B|A|994
7D80|1|B|C|995
7D80|1|B|A|996
7D80|1|B|U|997
*
7D80|1|B|A|1044
7D80|1|B|C|1045
7D80|1|B|A|1046
7D80|1|B|G|1047
*
7D80|1|B|C|1210
7D80|1|B|U|1211
7D80|1|B|U|1212
7D80|1|B|A|1213
7D80|1|B|C|1214
7D80|1|B|G|1215

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S14