J3_7D80_040

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCGUCAG*CGCAACC*GAUGACGUC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|G|1061
7D80|1|B|U|1062
7D80|1|B|C|1063
7D80|1|B|G|1064
7D80|1|B|U|1065
7D80|1|B|C|1066
7D80|1|B|A|1067
7D80|1|B|G|1068
*
7D80|1|B|C|1107
7D80|1|B|G|1108
7D80|1|B|C|1109
7D80|1|B|A|1110
7D80|1|B|A|1111
7D80|1|B|C|1112
7D80|1|B|C|1113
*
7D80|1|B|G|1187
7D80|1|B|A|1188
7D80|1|B|U|1189
7D80|1|B|G|1190
7D80|1|B|A|1191
7D80|1|B|C|1192
7D80|1|B|G|1193
7D80|1|B|U|1194
7D80|1|B|C|1195

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain F

30S ribosomal protein S5

Chain J

30S ribosomal protein S9

Chain K

30S ribosomal protein S10

Chain O

30S ribosomal protein S14