J3_7D80_042

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUAU*AGAC*GGUGGG

Length

15 nucleotides

Bulged bases

7D80|1|B|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|C|1114
7D80|1|B|U|1115
7D80|1|B|U|1116
7D80|1|B|A|1117
7D80|1|B|U|1118
*
7D80|1|B|A|1155
7D80|1|B|G|1156
7D80|1|B|A|1157
7D80|1|B|C|1158
*
7D80|1|B|G|1181
7D80|1|B|G|1182
7D80|1|B|U|1183
7D80|1|B|G|1184
7D80|1|B|G|1185
7D80|1|B|G|1186

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S2

Chain D

30S ribosomal protein S3

Chain J

30S ribosomal protein S9

Chain K

30S ribosomal protein S10

Chain O

30S ribosomal protein S14