J3_7D80_045

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7D80|1|A|U|686, 7D80|1|A|A|792, 7D80|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D80_045 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1414

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7D80|1|A|U|683
7D80|1|A|G|684
7D80|1|A|A|685
7D80|1|A|U|686
7D80|1|A|C|687
7D80|1|A|U|688
7D80|1|A|A|689
*
7D80|1|A|U|773
7D80|1|A|G|774
7D80|1|A|G|775
*
7D80|1|A|C|791
7D80|1|A|A|792
7D80|1|A|A|793
7D80|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain b

50S ribosomal protein L2