J3_7D80_046

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAUGUUG*CAUCAUUUAAAGAAA*UCAC

Length

27 nucleotides

Bulged bases

7D80|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|1055
7D80|1|A|G|1056
7D80|1|A|A|1057
7D80|1|A|U|1058
7D80|1|A|G|1059
7D80|1|A|U|1060
7D80|1|A|U|1061
7D80|1|A|G|1062
*
7D80|1|A|C|1076
7D80|1|A|A|1077
7D80|1|A|U|1078
7D80|1|A|C|1079
7D80|1|A|A|1080
7D80|1|A|U|1081
7D80|1|A|U|1082
7D80|1|A|U|1083
7D80|1|A|A|1084
7D80|1|A|A|1085
7D80|1|A|A|1086
7D80|1|A|G|1087
7D80|1|A|A|1088
7D80|1|A|A|1089
7D80|1|A|A|1090
*
7D80|1|A|U|1101
7D80|1|A|C|1102
7D80|1|A|A|1103
7D80|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain h

50S ribosomal protein L11