J3_7D80_051
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 7D80|1|a|U|14, 7D80|1|a|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D80_051 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1413
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7D80|1|a|G|10
7D80|1|a|C|11
7D80|1|a|C|12
7D80|1|a|G|13
7D80|1|a|U|14
7D80|1|a|A|15
7D80|1|a|G|16
*
7D80|1|a|C|68
7D80|1|a|G|69
7D80|1|a|C|70
*
7D80|1|a|G|106
7D80|1|a|G|107
7D80|1|a|A|108
7D80|1|a|A|109
7D80|1|a|C|110
Current chains
- Chain a
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L18
- Chain t
- 50S ribosomal protein L25
- Chain u
- 50S ribosomal protein L27
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