J3_7DCO_003

3D structure

PDB id

7DCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGG*CAUAGAAA*UC

Length

14 nucleotides

Bulged bases

7DCO|1|B|G|27, 7DCO|1|B|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DCO|1|B|G|25
7DCO|1|B|A|26
7DCO|1|B|G|27
7DCO|1|B|G|28
*
7DCO|1|B|C|125
7DCO|1|B|A|126
7DCO|1|B|U|127
7DCO|1|B|A|128
7DCO|1|B|G|129
7DCO|1|B|A|130
7DCO|1|B|A|131
7DCO|1|B|A|132
*
7DCO|1|B|U|145
7DCO|1|B|C|146

Current chains

Chain B

U5 snRNA

Nearby chains

Chain N

BUD31 isoform 1