J3_7DCO_005
3D structure
- PDB id
- 7DCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAGU*ACCGUUUUACA*UGCCUUUUGG
- Length
- 25 nucleotides
- Bulged bases
- 7DCO|1|F|U|89, 7DCO|1|F|U|90, 7DCO|1|F|A|91, 7DCO|1|H|U|16, 7DCO|1|H|U|17, 7DCO|1|H|U|18, 7DCO|1|H|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7DCO|1|F|C|61
7DCO|1|F|A|62
7DCO|1|F|G|63
7DCO|1|F|U|64
*
7DCO|1|F|A|83
7DCO|1|F|C|84
7DCO|1|F|C|85
7DCO|1|F|G|86
7DCO|1|F|U|87
7DCO|1|F|U|88
7DCO|1|F|U|89
7DCO|1|F|U|90
7DCO|1|F|A|91
7DCO|1|F|C|92
7DCO|1|F|A|93
*
7DCO|1|H|U|12
7DCO|1|H|G|13
7DCO|1|H|C|14
7DCO|1|H|C|15
7DCO|1|H|U|16
7DCO|1|H|U|17
7DCO|1|H|U|18
7DCO|1|H|U|19
7DCO|1|H|G|20
7DCO|1|H|G|21
Current chains
- Chain F
- U6 snRNA
- Chain H
- U2 snRNA
Nearby chains
- Chain A
- PRP8 isoform 1
- Chain B
- U5 spliceosomal RNA; U5 snRNA
- Chain G
- pre-mRNA
- Chain J
- CLF1 isoform 1
- Chain L
- Pre-mRNA-splicing factor CEF1
- Chain P
- Pre-mRNA-processing protein 45
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain T
- HLJ1_G0054350.mRNA.1.CDS.1
- Chain v
- PRP11 isoform 1
Coloring options: